Installation | Loading the package | Loading the model and generating a synthetic dataset | Adapt the number of particles | Adapt the proposal distribution | Compute DIC | Convert between LibBi times and actual times or dates | Create inference chains
Package: rbi.helpers 0.4.1.9000
rbi.helpers: 'rbi' Helper Functions
Contains a collection of helper functions to use with 'rbi', the R interface to 'LibBi', described in Murray et al. (2015) <doi:10.18637/jss.v067.i10>. It contains functions to adapt the proposal distribution and number of particles in particle Markov-Chain Monte Carlo, as well as calculating the Deviance Information Criterion (DIC) and converting between times in 'LibBi' results and R time/dates.
Authors:
rbi.helpers_0.4.1.9000.tar.gz
rbi.helpers_0.4.1.9000.zip(r-4.7)rbi.helpers_0.4.1.9000.zip(r-4.6)rbi.helpers_0.4.1.9000.zip(r-4.5)
rbi.helpers_0.4.1.9000.tgz(r-4.6-any)rbi.helpers_0.4.1.9000.tgz(r-4.5-any)
rbi.helpers_0.4.1.9000.tar.gz(r-4.7-any)rbi.helpers_0.4.1.9000.tar.gz(r-4.6-any)
rbi.helpers_0.4.1.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
rbi.helpers/json (API)
| # Install 'rbi.helpers' in R: |
| install.packages('rbi.helpers', repos = c('https://sbfnk.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sbfnk/rbi.helpers/issues
Last updated from:80f11a9b71. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 146 | ||
| source / vignettes | OK | 169 | ||
| linux-release-x86_64 | OK | 135 | ||
| macos-release-arm64 | OK | 167 | ||
| macos-oldrel-arm64 | OK | 252 | ||
| windows-devel | OK | 100 | ||
| windows-release | OK | 95 | ||
| windows-oldrel | OK | 87 | ||
| wasm-release | OK | 125 |
Exports:acceptance_rateadapt_particlesadapt_proposalDICnumeric_to_timetime_to_numeric
Dependencies:clicpp11data.tablegenericsgluelatticelifecyclelubridatemagrittrMatrixncdf4plyrprocessxpsR6rbiRcppreshape2rlangstringistringrtimechangevctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compute acceptance rate | acceptance_rate |
| Adapt the number of particles | adapt_particles |
| Adapt the proposal distribution of MCMC using the covariance of samples | adapt_proposal |
| Compute Deviance Information Criterion (DIC) for a libbi model | DIC DIC.libbi |
| Convert numeric times to actual times or dates | numeric_to_time |
| Convert actual times or dates to numeric times | time_to_numeric |
